The complexity and scale of biological data are growing at an explosive rate. Currently, the main bottleneck towards new biological insights is often our ability to interpret existing data, rather than limitations in the availability of data. In recent years, the field of Machine Learning has provided a number of spectacular advances within various biological domains, and the community of researchers applying Machine Learning to address biological problems is rapidly growing. This conference is an attempt to highlight some of the important current developments on the interface between machine learning and biology—with particular focus on the area of biomolecular modelling and relevant machine learning tools.
Ken Dill
Distinguished Professor of Physics & Chemistry, Stony Brook University
Director, Laufer Center for Physical & Quantitative Biology
Klaus-Robert Müller
Professor, Technische Universität Berlin
Distinguished professor at Korea University, Seoul
Co-director of the Berlin Big Data Center
Frank Noé
Professor, Freie Universität Berlin
Jinbo Xu
Professor of Toyota Technological Institute at Chicago
Senior Fellow, Computational Institute at the University of Chicago
Anatole von Lilienfeld
Professor at Dept. of Chemistry, University of Basel
Debora S. Marks
Assistant professor of Systems Biology, Harvard Medical School
Douglas Theobald
Associate Professor of Biochemistry, Brandeis University
José Miguel Hernández-Lobato
University Lecturer in Machine Learning, Department of Engineering, University of Cambridge
Chloé-Agathe Azencott
Faculty Researcher at Mines ParisTech
Michael Golden
DPhil student at Brasenose College, Oxford
Simon Olsson
Alexander von Humboldt postdoctoral fellow, Freie Universität Berlin
John Ingraham
PhD Student at Harvard University
Alexander Bard
Swedish cyber-philosopher, music producer and highly sought-after international speaker. He has given lectures on the philosophical, sociological and economic implications of the internet revolution since the late 1990s.
Michael Sørensen
Professor and Chair of the Department of Mathematical Sciences, University of Copenhagen
Christian Igel
Professor, Department of Computer Science, University of Copenhagen
Ole Winther
Professor at Section for Cognitive Systems, Technical University of Denmark
Group leader of Gene Regulation, Bioinformatics, University of Copenhagen
Morten Mørup
Associate Professor at the Section for Cognitive Systems, Technical University of Denmark
Thursday (Nov 9) | Friday (Nov 10) | ||
Session 1 Predicting biomolecular structure Chair: Thomas Hamelryck |
Mini session Machine Learning tools Chair: Thomas Hamelryck |
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8:45-9:00 | Opening remarks | 9:15-10:00 | Christian Igel Large-scale machine learning without cloud or cluster |
9:00-10:00 | Ken Dill The combinatoric challenge of computing protein structures |
Session 4 |
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10:00-10:30 | Coffee | 10:00-11:00 | Klaus-Robert Müller Machine learning meets quantum chemistry |
10:30-11:15 | Jinbo Xu Protein contact prediction and folding by deep learning |
11:00-11:30 | Coffee |
11:15-12:00 | John Ingraham Learning the sequence-to-structure map |
11:30-12:15 | Anatole von Lilienfeld Quantum machine learning |
12:00-13:00 | Lunch | 12:15-13:15 | Lunch |
Session 2 Biological Sequence Analysis Chair: Wouter Boomsma |
Session 5 Directional Data Chain: Søren Hauberg |
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13:00-13:45 | Debora Marks Generative models for genomics |
13:15-13:45 | Michael Sørensen Toroidal diffusions with a view to protein structure |
13:45-14:30 | Douglas Theobald Fast Bayesian simultaneous optimization of multiple structural superpositions and alignments |
13:45-14:15 | Michael Golden A generative angular model of protein structure evolution |
14:30-15:00 | Ole Winther Deep learning for biological sequence analysis |
14:15-14:45 | Morten Mørup Directional statistics and Bayesian inference for the modelling of functional neuroimaging data |
15:00-15:15 | Coffee | 14:45-15:00 | Coffee |
Session 3 Chemical design and drug response Chair: Jes Frellsen |
Session 6 Protein Dynamics Chair: Wouter Boomsma |
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15:15-16:00 | Chloé-Agathe Azencott Leveraging task similarity in multi-task learning for drug response prediction |
15:00-15:45 | Frank Noé Learning molecular kinetics |
16:00-16:45 | Miguel Hernández-Lobato Grammar variational autoencoder |
15:45-16:30 | Simon Olsson Conditional models of protein dynamics driven by simulation and experiment |
16:45-18:45 | Poster Session | 16:30-16:40 | Break |
19:00- | Conference Dinner at Nørrebro Bryghus |
16:40-17:10 | Closing talk Alexander Bard Beyond man and machine—the rise of intelligent systems in a network world |
17:10-18:00 | Closing reception |
Two types of ticket are available for this conference, see detail below.
Please be aware that availability is limited and the conference may sell out.
Click the button below for registration.
Conference attendance with lunch (early bird) This includes conference attendance and lunch Thursday and Friday. Deadline: October 1, 2017 |
DKK200 |
Conference attendance with lunch This includes conference attendance and lunch Thursday and Friday. Deadline: November 1, 2017 |
DKK300 |
Conference attendance with conference dinner This includes conference attendance, lunch Thursday and Friday and conference dinner Thursday evening at Nørrebro Bryghus. Deadline: October 30, 2017 |
DKK700 |
Abstract for posters session can be submitted to with subject "Abstract for poster" no later than October 15, 2017. The abstract must be submitted as a single PDF file containing 1) a title, 2) a list of authors and 3) an abstract of no more than 250 words.
The poster abstracts will be lightly peer-reviewed and authors will be notified regarding acceptance by the end of October.
If you are visiting from abroad we recommend the following hotels:
The conference takes place at
To get to the venue from the airport take the Metro M2 to "Nørreport Station" and take a bus. Either take Bus 42 or Bus 6A to "Arresøgade (Tagensvej)" and walk the rest of the way. Both Google Maps and local Danish Travel Planner are most helpful.
The following posters have been accepted for presentation in the poster session:
The conference is jointly organized by:
For matters regarding the conference, you can contact .
We are grateful for the generous funding from The Dynamical Systems Interdisciplinary Network under The Excellence Programme for Interdisciplinary Research at the University of Copenhagen.